类别 | 软件名称 | 版本 | module版本 |
基因测序 | bwa | 0.7.17 | apps/bwa/arm_0.7.17 |
基因测序 | bzip2 | 1.0.6 | apps/bzip2/arm_1.0.6 |
基因测序 | canu | 2 | apps/canu/2.0 |
基因测序 | cmake | 3.17.2 | apps/cmake/arm_3.17.2 |
基因测序 | fltk | 1.3.5 | apps/fltk/arm_1.3.5 |
基因测序 | Flye_assembler | 2.7.1 | apps/Flye_assembler/2.7.1 |
基因测序 | gawk | 5.1.0 | apps/gawk/arm_5.1.0 |
基因测序 | htslib | 1.1 | apps/htslib/arm_1.10 |
基因测序 | java | 151 | apps/java/arm_JDK_1.8.0_151 |
基因测序 | libcur | 7.58 | apps/libcur/arm_7.58 |
基因测序 | lofreq | 2.1.4 | apps/lofreq/arm_2.1.4 |
基因测序 | miniasm | 0.3 | apps/miniasm/arm_0.3 |
基因测序 | minimap2 | 2.17 | apps/minimap2/arm_2.17 |
基因测序 | openssl | 1.1.1 | apps/openssl/1.1.1 |
基因测序 | pcre | 8.4.0 | apps/pcre/arm_8.4.0 |
数据处理 | python | 3.6.8 | apps/python/arm_3.6.8 |
数据处理 | python | 3.7.4 | apps/python/arm_3.7.4 |
数据处理 | R | 3.5.3 3.2.1 3.4.3 3.5.1 3.6.1 4.1.0 4.3.2 | apps/R/arm_3.5.3 apps/R/3.2.1 apps/R/3.4.3 apps/R/3.5.1 apps/R/3.6.1 apps/R/4.1.0 apps/R/4.3.2 |
基因测序 | racon | 1.4.12 | apps/racon/1.4.12 |
基因测序 | samtools | 1.8 | apps/samtools/arm_1.8 |
基因测序 | smartdenovo | 1 | apps/smartdenovo/1.0 |
基因测序 | STAR | 2.6.0c | apps/STAR/arm_2.6.0c |
基因测序 | wtdbg2 | 2.5 | apps/wtdbg2/arm_2.5 |
基因测序 | xz | 5.2.3 | apps/xz/arm_5.2.3 |
基因测序 | zlib | 1.2.11 | apps/zlib/arm_1.2.11 |
compiler | gnu | 9.2.0 | compiler/gnu/arm_9.2.0 |
mathlib | lapack/gnu | 3.8.0 | mathlib/lapack/gnu/arm_3.8.0 |
| mpi | openmpi | 4.0.1 | mpi/openmpi/arm_4.0.1 |
| 工具 | Gst-ffmpeg | 4.1 | apps/ffmpeg/4.1 |
| 工具 | freesurfer | 7.3.2 | apps/freesurfer7.3.2 |
| 工具 | dcm2niix | v1.0.20211006 | apps/dcm2niix |
| 工具 | MUSE | 3 | apps/muse |
| 工具 | libevent | 2.1.12 | tools/libevent/2.1.12 |
| 生物医学工程 | ITK | 5.2.1 | apps/itk/5.2.1 |
| 生物医学工程 | Ants | 1.9.x | apps/ants |
| 医学影像分析 | Infant FreeSurfer | 4a14499 | bmeapps/bin/freeres |
| 工具 | Go | 1.13 | 7/apps/go/1.13 |
| 工具 | Samtools | 1.8 | apps/samtools/1.8 7/apps/samtools/1.8 apps/samtools/arm_1.8 |
| 工具 | bowtie | 2.4.2 | apps/bowtie/2.4.2 apps/bowtie2/arm_2.4.2 |
| 工具 | GATK | 4.2.0 | apps/gatk/4.2.0.0 apps/gatk/arm_4.2.0 |
| 工具 | Boost | 1.76 | apps/boost/1.76 |
| 工具 | Cmake | 3.21.1 | apps/cmake/3.21.1 |
| 工具 | Anaconda | 3 | apps/anaconda3/2021.05 tools/conda/anaconda.2021.11 tools/conda/anaconda.2023.09 |
| 工具 | Miniconda | 3 | tools/conda/miniconda3 |
| 工具 | arwpost | 3.0 | apps/arwpost/intel/3.0 |
| 工具 | MATLAB（MDCS） | MDCS_2021B MDCS_2022A MDCS_2023B | apps/matlab/2021b apps/matlab/2022a apps/matlab/2023b |
| 原子分子软件 | abinit | 8.6.1 9.4.2 | apps/abinit/intelmpi/8.6.1 apps/abinit/intelmpi/9.4.2 |
| 原子分子软件 | Cp2k | 8.1 | apps/cp2k/intelmpi/8.1 |
| 原子分子软件 | namd | 2.14 | apps/namd/intelmpi/2.14 |
| 原子分子软件 | quantum-espresso | 6.7 | apps/quantum-espresso/intelmpi/6.7 |
| 原子分子软件 | VASP （需有授权） | 5.4.1 5.4.4 | apps/vasp/intelmpi/5.4.1 apps/vasp/intelmpi/5.4.4 |
| 生物信息 | chimera | 1.14 | apps/chimera/1.14 |
| 生物信息 | EMAN | 2 | apps/eman2/2.0 |
| 生物信息 | RELION | 3.1 4.0 | apps/relion/7/relion-3.1 module load relion/4.0 |
| 生物信息 | FSL | 6.0 | apps/fsl/6.0 |
| 生物信息 | AFNI | 21.3.11 | apps/afni |
结构生物 学 | UCSF Chimera | 371 | apps/chimera/1.17 |
结构生物 学 | IMOD | 4.11.25 | apps/IMOD/4.11.25 |
