<

常用软件

日期:2021-04-28文章来源:图书信息中心

类别

软件名称

版本

module版本

基因测序

bwa

0.7.17

apps/bwa/arm_0.7.17

基因测序

bzip2

1.0.6

apps/bzip2/arm_1.0.6

基因测序

canu

2

apps/canu/2.0

基因测序

cmake

3.17.2

apps/cmake/arm_3.17.2

基因测序

fltk

1.3.5

apps/fltk/arm_1.3.5

基因测序

Flye_assembler

2.7.1

apps/Flye_assembler/2.7.1

基因测序

gawk

5.1.0

apps/gawk/arm_5.1.0

基因测序

htslib

1.1

apps/htslib/arm_1.10

基因测序

java

151

apps/java/arm_JDK_1.8.0_151

基因测序

libcur

7.58

apps/libcur/arm_7.58

基因测序

lofreq

2.1.4

apps/lofreq/arm_2.1.4

基因测序

miniasm

0.3

apps/miniasm/arm_0.3

基因测序

minimap2

2.17

apps/minimap2/arm_2.17

基因测序

openssl

1.1.1

apps/openssl/1.1.1

基因测序

pcre

8.4.0

apps/pcre/arm_8.4.0

数据处理

python

3.6.8

apps/python/arm_3.6.8

数据处理

python

3.7.4

apps/python/arm_3.7.4

数据处理

R

3.5.3

3.2.1

3.4.3

3.5.1

3.6.1

4.1.0

4.3.2

apps/R/arm_3.5.3

apps/R/3.2.1

apps/R/3.4.3

apps/R/3.5.1

apps/R/3.6.1

apps/R/4.1.0

apps/R/4.3.2

基因测序

racon

1.4.12

apps/racon/1.4.12

基因测序

samtools

1.8

apps/samtools/arm_1.8

基因测序

smartdenovo

1

apps/smartdenovo/1.0

基因测序

STAR

2.6.0c

apps/STAR/arm_2.6.0c

基因测序

wtdbg2

2.5

apps/wtdbg2/arm_2.5

基因测序

xz

5.2.3

apps/xz/arm_5.2.3

基因测序

zlib

1.2.11

apps/zlib/arm_1.2.11

compiler

gnu

9.2.0

compiler/gnu/arm_9.2.0

mathlib

lapack/gnu

3.8.0

mathlib/lapack/gnu/arm_3.8.0

mpiopenmpi4.0.1mpi/openmpi/arm_4.0.1
工具Gst-ffmpeg4.1apps/ffmpeg/4.1
工具freesurfer7.3.2apps/freesurfer7.3.2
工具dcm2niixv1.0.20211006apps/dcm2niix
工具MUSE3apps/muse 
工具libevent2.1.12tools/libevent/2.1.12
生物医学工程ITK5.2.1apps/itk/5.2.1
生物医学工程Ants1.9.xapps/ants
医学影像分析
Infant
FreeSurfer
4a14499
bmeapps/bin/freeres
工具Go1.137/apps/go/1.13
工具Samtools1.8

apps/samtools/1.8

7/apps/samtools/1.8

apps/samtools/arm_1.8

工具bowtie2.4.2

apps/bowtie/2.4.2

apps/bowtie2/arm_2.4.2

工具GATK4.2.0

apps/gatk/4.2.0.0

apps/gatk/arm_4.2.0

工具Boost1.76apps/boost/1.76 
工具Cmake3.21.1apps/cmake/3.21.1
工具Anaconda3

apps/anaconda3/2021.05

tools/conda/anaconda.2021.11

tools/conda/anaconda.2023.09

工具Miniconda3tools/conda/miniconda3
工具arwpost3.0apps/arwpost/intel/3.0
工具MATLABMDCS

MDCS_2021B

MDCS_2022A

MDCS_2023B

apps/matlab/2021b

apps/matlab/2022a

apps/matlab/2023b

原子分子软件abinit

8.6.1

9.4.2

apps/abinit/intelmpi/8.6.1

apps/abinit/intelmpi/9.4.2

原子分子软件Cp2k8.1

apps/cp2k/intelmpi/8.1

原子分子软件namd2.14apps/namd/intelmpi/2.14
原子分子软件quantum-espresso6.7apps/quantum-espresso/intelmpi/6.7
原子分子软件VASP
(需有授权)

5.4.1

5.4.4

apps/vasp/intelmpi/5.4.1

apps/vasp/intelmpi/5.4.4

生物信息chimera1.14apps/chimera/1.14
生物信息EMAN2apps/eman2/2.0 
生物信息RELION

3.1

4.0

apps/relion/7/relion-3.1

module load relion/4.0

生物信息FSL6.0apps/fsl/6.0 
生物信息AFNI21.3.11apps/afni
结构生物
UCSF
Chimera
371
apps/chimera/1.17 
结构生物
IMOD
4.11.25apps/IMOD/4.11.25